Materials

Filter Clear filters
- Date added
- In the last 24 hours
- In the last 1 week
- In the last 1 month
- Scientific topic
- Algorithms85
- Computer programming85
- Data structures85
- Programming languages85
- Software development85
- Software engineering85
- Comparative transcriptomics43
- Transcriptome43
- Transcriptomics43
- Biodiversity37
- Exomes36
- Genome annotation36
- Genomes36
- Genomics36
- Personal genomics36
- Synthetic genomics36
- Viral genomics36
- Whole genomes36
- Biological sequences35
- Sequence analysis35
- Sequence databases35
- Metagenomics33
- Shotgun metagenomics33
- Computational ecology30
- Ecoinformatics30
- Ecological informatics30
- Ecology30
- Ecosystem science30
- Bayesian methods29
- Biostatistics29
- Descriptive statistics29
- Gaussian processes29
- Inferential statistics29
- Markov processes29
- Multivariate statistics29
- Probabilistic graphical model29
- Probability29
- Statistics29
- Statistics and probability29
- Community analysis28
- Environmental microbiology28
- Microbial ecology28
- Microbiome28
- Molecular community analysis28
- Assembly23
- Sequence assembly23
- Bottom-up proteomics20
- Discovery proteomics20
- MS-based targeted proteomics20
- MS-based untargeted proteomics20
- Metaproteomics20
- Peptide identification20
- Protein and peptide identification20
- Proteomics20
- Quantitative proteomics20
- Targeted proteomics20
- Top-down proteomics20
- Antimicrobial stewardship19
- Medical microbiology19
- Microbial genetics19
- Microbial physiology19
- Microbial surveillance19
- Microbiological surveillance19
- Microbiology19
- Molecular infection biology19
- Molecular microbiology19
- Taxonomy15
- Epigenomics13
- Python12
- Python program12
- Python script12
- py12
- DNA variation11
- Genetic variation11
- Genomic variation11
- Mutation11
- Polymorphism11
- Somatic mutations11
- Diffraction experiment10
- Imaging10
- Microscopy10
- Microscopy imaging10
- Optical super resolution microscopy10
- Photonic force microscopy10
- Photonic microscopy10
- Evolution8
- Evolutionary biology8
- DNA metabarcoding7
- Data management7
- Environmental metabarcoding7
- Exometabolomics7
- LC-MS-based metabolomics7
- MS-based metabolomics7
- MS-based targeted metabolomics7
- MS-based untargeted metabolomics7
- Mass spectrometry-based metabolomics7
- Metabarcoding7
- Metabolites7
- Metabolome7
- Metabolomics7
- Show N_FILTERS more
- Tool
- Galaxy280
- FastQC32
- MultiQC22
- SAMtools21
- scikit-learn16
- BEDTools15
- BWA15
- Falco13
- SCANPY13
- DeepTools12
- fastp12
- BLAST11
- Cutadapt10
- taxonomy_krona_chart10
- GEMINI9
- Bandage8
- FASTX-Toolkit8
- NanoPlot8
- QUAST8
- ggplot28
- FreeBayes7
- JBrowse7
- Trimmomatic7
- BamTools6
- STAR6
- Biopython5
- Flye5
- Galaxy Image Analysis5
- MetaPhlAn5
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- Trim Galore5
- Unicycler5
- anndata5
- kraken25
- BUSCO4
- Bowtie 24
- DESeq24
- Diamond4
- HISAT24
- KrakenTools4
- MACS4
- MaxQuant4
- Minimap24
- Salmon4
- Workflow4Metabolomics4
- annotatemyids4
- bx-python4
- mothur4
- scikit-image4
- seqtk4
- snpEff4
- BCFtools3
- Bracken3
- Bwa-mem23
- Clustal 1.8 (Clustal W, Clustal X)3
- DropletUtils3
- GOseq3
- Galactic Circos3
- GraPhlAn3
- MAFFT3
- MSstats3
- Newick Utilities3
- RSeQC3
- RStudio3
- SeqCode3
- SortMeRNA3
- Stacks3
- export2graphlan3
- humann3
- msConvert3
- xcms3
- Bakta2
- Bowtie2
- Cardinal2
- CellProfiler2
- ChIPpeakAnno2
- Combine Metaphlan and HUMAnN2
- FASTQE2
- FastTree2
- GECKO2
- GOEnrichment2
- GenomeScope 2.02
- HUMAnN22
- Heinz2
- InterProScan (EBI)2
- JBrowse 22
- MAGeCK2
- MEME2
- Medaka2
- Merqury2
- R2
- Racon2
- Recentrifuge2
- RepeatMasker2
- SPAdes2
- SRA Software Toolkit2
- StringTie2
- TRANSIT2
- Targetfinder.org2
- UCSC Genome Browser Utilities2
- Show N_FILTERS more
- Content provider
- GTN552
- SIB Swiss Institute of Bioinformatics56
- PaN Training17
- VIB Training & Conferences13
- Glittr.org5
- Danish National Health Data Science Sandbox2
- Bioconductor1
- ELIXIR1
- Show N_FILTERS more
- Keyword
- Galaxy Server administration66
- Development in Galaxy45
- Single Cell39
- biodiversity36
- microgalaxy33
- Foundations of Data Science32
- Ecology30
- Statistics and machine learning29
- jupyter-notebook29
- Transcriptomics27
- Microbiome26
- Contributing to the Galaxy Training Material25
- training25
- Genome Annotation21
- Assembly20
- Proteomics20
- ansible20
- Using Galaxy and Managing your Data19
- git-gat18
- Climate17
- FAIR Data, Workflows, and Research17
- Introduction to Galaxy Analyses16
- Teaching and Hosting Galaxy training16
- interactive-tools16
- Python15
- earth-system15
- data management14
- Epigenetics13
- metagenomics13
- prokaryote13
- work-in-progress13
- fair12
- paper-replication12
- MIGHTS11
- Sequence analysis11
- Variant Analysis11
- genes and genomes10
- ocean10
- plants10
- cyoa9
- transcriptomics9
- Evolution8
- Galaxy Community Building8
- assembly8
- data stewardship8
- gmod8
- label-free8
- medicine and health8
- nanopore8
- 10x7
- DDA7
- EBV dataset7
- EBV workflow7
- FAIR Data7
- Imaging7
- Metabolomics7
- ecology7
- español7
- jbrowse17
- metabarcoding7
- next generation sequencing7
- programming7
- reproducibility7
- FAIR6
- covid196
- data visualisation6
- deploying6
- deutsch6
- elixir6
- illumina6
- italiano6
- jobs6
- metabolomics6
- ro-crate6
- services and resources6
- train-the-trainers6
- 16S5
- alan bridge group5
- bacteria5
- deconvolution5
- dmp5
- label-TMT115
- metatranscriptomics5
- mouse5
- taxonomic profiling5
- workflows5
- Community4
- Digital Humanities4
- Programming4
- QC4
- SIG4
- Visualisation4
- Workflows4
- and Research4
- diversity4
- environmental science4
- galaxy-intro4
- genetic composition EBV class4
- infectious disease4
- pangeo4
- Show N_FILTERS more
- Competency level
- Beginner
- Not specified8628
- Intermediate150
- Advanced20
- Show N_FILTERS more
- Licence
- Creative Commons Attribution 4.0 International560
- License Not Specified69
- Creative Commons Attribution Share Alike 4.0 International9
- Creative Commons Attribution Non Commercial Share Alike 4.0 International4
- MIT License3
- Creative Commons Attribution Non Commercial 4.0 International1
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
- Show N_FILTERS more
- Target audience
- Students395
- Galaxy Administrators111
- Instructors49
- Life scientists7
- Bench biologists5
- Researchers5
- Biologists4
- Laboratory technicians4
- Veterinarians4
- PhD Students3
- biologists3
- Beginner2
- Scientific community2
- beginner bioinformaticians2
- scientists2
- Clinical Scientists1
- Graduate Students1
- Life Science Researchers1
- PhD students1
- Post Docs1
- Researcher1
- Scientists1
- Undergraduate students1
- adults1
- beginner1
- biocurators1
- data stewards1
- Show N_FILTERS more
- Author
- Helena Rasche94
- Bérénice Batut93
- Saskia Hiltemann54
- SIB Swiss Institute of Bioinformatics50
- Björn Grüning42
- Simon Gladman30
- Yvan Le Bras26
- Nate Coraor25
- Nicola Soranzo24
- Anton Nekrutenko23
- John Chilton23
- Marie Josse19
- Subina Mehta19
- Wendi Bacon18
- Anne Fouilloux16
- Anthony Bretaudeau16
- Fotis E. Psomopoulos15
- Mehmet Tekman15
- Paul Zierep15
- Bazante Sanders14
- The Carpentries13
- Anup Kumar12
- Katherine Do12
- Maria Doyle12
- Katarzyna Kamieniecka11
- Krzysztof Poterlowicz11
- Pavankumar Videm11
- Cristóbal Gallardo10
- Dave Clements10
- Donny Vrins10
- Julia Jakiela10
- Martin Čech10
- Delphine Lariviere9
- James Johnson9
- Khaled Jum'ah9
- Marius van den Beek9
- Anika Erxleben8
- Daniel Blankenberg8
- Geert van Geest8
- Kaivan Kamali8
- Lucille Delisle8
- Wandrille Duchemin8
- Joachim Wolff7
- Pratik Jagtap7
- Wolfgang Maier7
- Allegra Via6
- Anna Syme6
- Anne Pajon6
- Clemens Blank6
- Coline Royaux6
- ELIXIR Goblet Train the Trainers6
- Melanie Föll6
- Michael Charleston6
- Morgan Howells6
- Patricia Palagi6
- Philippe Le Mercier6
- Robert Andrews6
- Valentin Loux6
- Alex Ostrovsky5
- Alexandre Cormier5
- Andrew Mason5
- Branka Franicevic5
- Dechen Bhuming5
- Deepak Tanwar5
- Diana Chiang Jurado5
- Emma Leith5
- Erwan Corre5
- Gildas Le Corguillé5
- Kellie Snow5
- Korneel Hens5
- Laura Cooper5
- Laura Leroi5
- Marisa Loach5
- Mira Kuntz5
- Munazah Andrabi5
- Nick Juty5
- Philippe Rocca-Serra5
- Polina Polunina5
- Sara Morsy5
- Saskia Lawson-Tovey5
- Solenne Correard5
- Stéphanie Robin5
- Xenia Perez Sitja5
- Alireza Khanteymoori4
- Amirhossein Naghsh Nilchi4
- Beatriz Serrano-Solano4
- Cyril Monjeaud4
- Daniela Schneider4
- Elisabeth Gasteiger4
- Engy Nasr4
- Florian Heyl4
- Hans-Rudolf Hotz4
- Hélène Chiapello4
- James Collier4
- Keiler Collier4
- Mallory Freeberg4
- Marie-Claude Blatter4
- Praveen Kumar4
- Ray Sajulga4
- Simon Bray4
- Show N_FILTERS more
- Contributor
- Saskia Hiltemann467
- Helena Rasche405
- Björn Grüning339
- Bérénice Batut199
- Nicola Soranzo157
- Martin Čech117
- Cristóbal Gallardo90
- Niall Beard83
- Anthony Bretaudeau77
- Nate Coraor66
- Wendi Bacon65
- Armin Dadras58
- Gildas Le Corguillé55
- William Durand54
- Simon Gladman50
- Marius van den Beek46
- Mehmet Tekman44
- Pavankumar Videm44
- Lucille Delisle42
- Teresa Müller42
- Yvan Le Bras42
- Marie Josse36
- Beatriz Serrano-Solano27
- Wolfgang Maier26
- Maria Doyle22
- Anne Fouilloux21
- Anup Kumar21
- Julia Jakiela20
- Tristan Reynolds18
- Melanie Föll16
- Subina Mehta16
- Marisa Loach15
- Paul Zierep15
- Pratik Jagtap15
- Deepti Varshney14
- Simon Bray14
- Bazante Sanders13
- Daniela Schneider13
- David López13
- Donny Vrins13
- Mira Kuntz13
- Anton Nekrutenko12
- Delphine Lariviere12
- Matthias Bernt12
- Pablo Moreno12
- Timothy J. Griffin12
- Gianmauro Cuccuru11
- Mélanie Petera11
- Peter van Heusden11
- Khaled Jum'ah9
- John Chilton8
- Kaivan Kamali8
- Verena Moosmann8
- Amirhossein Naghsh Nilchi7
- Anna Syme7
- Diana Chiang Jurado7
- Florian Heyl7
- Hans-Rudolf Hotz7
- Katherine Do7
- Melissa Burke7
- Morgan Howells7
- Paul De Geest7
- Tomas Klingström7
- Alexandre Cormier6
- Dave Clements6
- Ekaterina Polkh6
- Katarzyna Kamieniecka6
- Leonid Kostrykin6
- Mallory Freeberg6
- Solenne Correard6
- Alex Ostrovsky5
- Alireza Khanteymoori5
- Bert Droesbeke5
- Catherine Bromhead5
- Enis Afgan5
- John Davis5
- Stéphanie Robin5
- Andrea Bagnacani4
- Clea Siguret4
- Coline Royaux4
- Dave B.4
- Eli Chadwick4
- Fotis E. Psomopoulos4
- Phil Reed4
- Alexander Botzki3
- Clemens Blank3
- Engy Nasr3
- Fabio Cumbo3
- Jennifer Hillman-Jackson3
- Joachim Wolff3
- Keiler Collier3
- Laura Leroi3
- Mateo Boudet3
- Mateusz Kuzak3
- Miaomiao Zhou3
- Nuwan Goonasekera3
- Paulo Cilas Morais Lyra Junior3
- Riccardo Massei3
- Ross Lazarus3
- Sofoklis Keisaris3
- Show N_FILTERS more
- Resource type
- e-learning417
- slides139
- hands-on tutorial13
- lessons4
- Training materials2
- Video2
- online tutorial2
- E-Learning1
- Jupyter notebooks1
- Lesson1
- Presentation1
- ViralZone1
- tutorial1
- video1
- Show N_FILTERS more
- Related resource
- Associated Training Datasets257
- Associated Workflows234
- Jupyter Notebook (with Solutions)28
- Jupyter Notebook (without Solutions)28
- Quarto/RMarkdown Notebook3
- Recoding1
- Slides1
- Show N_FILTERS more
- Node
- Switzerland61
- Belgium13
- Germany2
- Show N_FILTERS more
- Collection
- ELIXIR Biodiversity Community5
- ELIXIR hCNV community - collection of courses and materials.1
- PINK project1
- Show N_FILTERS more
- Status
- Active12
- Show N_FILTERS more
Only show materials from current space
Show disabled materials
Show materials with broken links
Show archived materials

Training materials

Competency level: Beginner

and User: scraper

and Across all spaces: true

647 materials found

Results per page:

Filter

Sort

Filter Clear filters

Training materials

Bioconductor Carpentry: Introduction to data analysis with R and Bioconductor

Montreal Forced Aligner

Pangenome analysis with Roary

Python for beginners

Nyandwi/PythonBasics

OpenTechSchool/python-beginners

Akuli/python-tutorial

talkpython/python-for-absolute-beginners-course

swaroopch/byte-of-python

Gentle Introduction to Python