Materials - RDM

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- Scientific topic
- Algorithms82
- Computer programming82
- Data structures82
- Programming languages82
- Software development82
- Software engineering82
- Data management68
- Metadata management68
- Research data management (RDM)68
- FAIR data54
- Findable, accessible, interoperable, reusable data54
- Biodiversity43
- Comparative transcriptomics43
- Transcriptome43
- Transcriptomics43
- Exomes42
- Genome annotation42
- Genomes42
- Genomics42
- Personal genomics42
- Synthetic genomics42
- Viral genomics42
- Whole genomes42
- Biological sequences34
- Sequence analysis34
- Sequence databases34
- Metagenomics33
- Shotgun metagenomics33
- Computational ecology30
- Ecoinformatics30
- Ecological informatics30
- Ecology30
- Ecosystem science30
- Bayesian methods29
- Biostatistics29
- Community analysis29
- Descriptive statistics29
- Environmental microbiology29
- Gaussian processes29
- Inferential statistics29
- Markov processes29
- Microbial ecology29
- Microbiome29
- Molecular community analysis29
- Multivariate statistics29
- Probabilistic graphical model29
- Probability29
- Statistics29
- Statistics and probability29
- Assembly23
- Sequence assembly23
- Bottom-up proteomics22
- Discovery proteomics22
- MS-based targeted proteomics22
- MS-based untargeted proteomics22
- Metaproteomics22
- Peptide identification22
- Protein and peptide identification22
- Proteomics22
- Quantitative proteomics22
- Targeted proteomics22
- Top-down proteomics22
- Antimicrobial stewardship19
- Medical microbiology19
- Microbial genetics19
- Microbial physiology19
- Microbial surveillance19
- Microbiological surveillance19
- Microbiology19
- Molecular infection biology19
- Molecular microbiology19
- Diffraction experiment15
- Imaging15
- Microscopy15
- Microscopy imaging15
- Optical super resolution microscopy15
- Photonic force microscopy15
- Photonic microscopy15
- Taxonomy15
- Bioinformatics14
- Open science14
- Epigenomics13
- DNA variation11
- Genetic variation11
- Genomic variation11
- Mutation11
- Polymorphism11
- Somatic mutations11
- Evolution8
- Evolutionary biology8
- Exometabolomics8
- LC-MS-based metabolomics8
- MS-based metabolomics8
- MS-based targeted metabolomics8
- MS-based untargeted metabolomics8
- Mass spectrometry-based metabolomics8
- Metabolites8
- Metabolome8
- Metabolomics8
- Metabonomics8
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- Operation
- Data handling30
- File handling30
- File processing30
- Processing30
- Report handling30
- Utility operation30
- Data analysis11
- Data extraction3
- Data retrieval3
- Data retrieval (metadata)3
- Metadata retrieval3
- Retrieval3
- Data formatting2
- Data management planning2
- Data reformatting2
- Database search2
- File format conversion2
- File formatting2
- File reformatting2
- Format conversion2
- Search2
- Annotation1
- Data brokering1
- Data deposition1
- Data deposition brokering1
- Data submission1
- Database deposition1
- Database retrieval1
- Database submission1
- Query1
- Query and retrieval1
- RNA-Seq analysis1
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- Tool
- Galaxy282
- FastQC32
- MultiQC22
- SAMtools21
- BEDTools16
- scikit-learn16
- BWA15
- Falco13
- SCANPY13
- DeepTools12
- fastp12
- BLAST11
- Cutadapt10
- taxonomy_krona_chart10
- GEMINI9
- Bandage8
- Data Stewardship Wizard8
- FASTX-Toolkit8
- NanoPlot8
- QUAST8
- ggplot28
- FreeBayes7
- JBrowse7
- Trimmomatic7
- BamTools6
- STAR6
- Biopython5
- Flye5
- Galaxy Image Analysis5
- MetaPhlAn5
- Minimap25
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- Trim Galore5
- Unicycler5
- anndata5
- kraken25
- BUSCO4
- Bowtie 24
- DESeq24
- Diamond4
- HISAT24
- KrakenTools4
- MACS4
- MaxQuant4
- RDMkit4
- Salmon4
- Workflow4Metabolomics4
- annotatemyids4
- bx-python4
- mothur4
- scikit-image4
- seqtk4
- snpEff4
- BCFtools3
- Bracken3
- Bwa-mem23
- Clustal 1.8 (Clustal W, Clustal X)3
- DropletUtils3
- GOseq3
- Galactic Circos3
- GraPhlAn3
- MAFFT3
- MSstats3
- Newick Utilities3
- RSeQC3
- RStudio3
- SeqCode3
- SortMeRNA3
- Stacks3
- export2graphlan3
- humann3
- msConvert3
- xcms3
- Bakta2
- Bowtie2
- Cardinal2
- CellProfiler2
- ChIPpeakAnno2
- Combine Metaphlan and HUMAnN2
- European Nucleotide Archive (ENA)2
- FASTQE2
- FastTree2
- GECKO2
- GOEnrichment2
- GenomeScope 2.02
- HUMAnN22
- Heinz2
- InterProScan (EBI)2
- JBrowse 22
- MAGeCK2
- MEME2
- Medaka2
- Merqury2
- Open Babel2
- R2
- Racon2
- Recentrifuge2
- RepeatMasker2
- SPAdes2
- SRA Software Toolkit2
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- Standard database or policy
- European Nucleotide Archive2
- FAIRsharing2
- Ontology Lookup Service2
- PRoteomics IDEntifications database2
- RDA DMP Common Standard for Machine-Actionable Data Management Plans2
- Bioschemas1
- Cellosaurus1
- Common Workflow Language1
- Investigation Study Assay JSON1
- Investigation Study Assay Tabular1
- Minimum Information about Plant Phenotyping Experiment1
- ModelArchive1
- Research Object Crate1
- Resource Identification Portal 1
- STRING: functional protein association networks1
- Schema.org1
- Search Tool for Interactions of Chemicals1
- The European Genome-phenome Archive1
- The Observational Medical Outcomes Partnership Common Data Model1
- UniProt Knowledgebase1
- Worldwide Protein Data Bank1
- Zenodo 1
- data.eNanoMapper.net1
- eNanoMapper Ontology1
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- Content provider
- GTN561
- DTLS - Dutch Techcentre For Life Sciences27
- SIB Swiss Institute of Bioinformatics13
- ELIXIR10
- ELIXIR Estonia8
- ELXIR-UK DaSH6
- PaN Training6
- ELIXIR Luxembourg4
- ELIXIR Norway3
- ELIXIR Portugal3
- University of Edinburgh3
- VIB Training & Conferences3
- Barcelona Supercomputing Center (BSC)2
- IFB French Institute of Bioinformatics2
- Cloud-SPAN1
- Department of Bioinformatics - BiGCaT, Maastricht University1
- EOSC4Cancer1
- Health-RI1
- InterMine1
- NanoCommons1
- Novo Nordisk Foundation Center for Protein Research1
- PerMedCoE1
- SciLifeLab1
- Seqera1
- Software Sustainability Institute1
- University of Cambridge Bioinformatics Training1
- de.NBI1
- eNanoMapper1
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- Keyword
- Galaxy Server administration66
- Development in Galaxy45
- Single Cell39
- biodiversity36
- microgalaxy33
- Foundations of Data Science32
- Ecology30
- Statistics and machine learning29
- jupyter-notebook29
- Microbiome27
- Transcriptomics27
- Contributing to the Galaxy Training Material26
- FAIR Data, Workflows, and Research24
- Genome Annotation21
- Proteomics20
- ansible20
- Assembly19
- Using Galaxy and Managing your Data19
- FAIR principles18
- git-gat18
- Climate17
- Metadata17
- Open Science17
- fair17
- HemaFAIR16
- Introduction to Galaxy Analyses16
- Teaching and Hosting Galaxy training16
- interactive-tools16
- earth-system15
- FAIR14
- Research Data Management14
- data stewardship14
- Data analysis13
- Epigenetics13
- FAIR Data13
- FAIR data13
- metagenomics13
- prokaryote13
- work-in-progress13
- Data reuse12
- Data sharing12
- data management12
- paper-replication12
- Data management planning11
- European research projects11
- MIGHTS11
- Sequence analysis11
- Variant Analysis11
- ocean10
- plants10
- cyoa9
- Evolution8
- Galaxy Community Building8
- Imaging8
- Metabolomics8
- assembly8
- gmod8
- label-free8
- nanopore8
- 10x7
- DDA7
- Data management7
- EBV dataset7
- EBV workflow7
- dmp7
- ecology7
- español7
- jbrowse17
- metabarcoding7
- Data Management6
- covid196
- deploying6
- deutsch6
- elixir6
- illumina6
- italiano6
- jobs6
- metabolomics6
- ro-crate6
- train-the-trainers6
- transcriptomics6
- 16S5
- Bioinformatics5
- Data Life Cycle5
- Data Management Plan5
- Data management planning5
- HELIOS5
- R5
- Rare Diseases5
- SARS-CoV-25
- Workflows5
- bacteria5
- deconvolution5
- label-TMT115
- metatranscriptomics5
- mouse5
- taxonomic profiling5
- workflows5
- Data collection4
- Data preserving4
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- Competency level
- Beginner
- Not specified1645
- Intermediate170
- Advanced22
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- Licence
- Creative Commons Attribution 4.0 International
- License Not Specified106
- Creative Commons Attribution Share Alike 4.0 International46
- Creative Commons Attribution Non Commercial Share Alike 4.0 International17
- MIT License12
- Other (Not Open)12
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International10
- Creative Commons Attribution 1.0 Generic5
- Creative Commons Zero v1.0 Universal5
- Apache License 2.04
- Creative Commons Attribution Non Commercial 4.0 International4
- Creative Commons Attribution No Derivatives 4.0 International3
- GNU General Public License v3.0 only2
- Creative Commons Attribution Non Commercial 2.0 Generic1
- GNU General Public License v2.0 only1
- Open Data Commons Attribution License v1.01
- Other (Open)1
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- Target audience
- Students428
- Galaxy Administrators111
- Instructors50
- Researchers31
- PhD candidate24
- Data stewards20
- Data Scientist16
- Data managers16
- PhD Students9
- Bioinformaticians8
- Researcher8
- Biologists7
- Clinicians7
- PhD candidates7
- Scientific community6
- Beginner5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Data Managers4
- Life Science Researchers4
- Master students4
- PI4
- data stewards4
- Academia/ Research Institution3
- Biologists with little or no prior computational experience3
- Data Scientists3
- Healthcare3
- Industry3
- Non-Profit Organisation3
- Scientists3
- data steward / data manager3
- project manager3
- Beginners2
- Bioinformatician2
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Chemists2
- Data Steward2
- Graduate students2
- Life Scientists2
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members2
- PhD students2
- Post Docs2
- Postdocs and Staff members2
- Principal Investigators (PIs)2
- Research scientists2
- bioinformaticians2
- plant researchers2
- policy officer2
- Anyone1
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Beginner informatics1
- Bench biologists1
- Bioinformatician, Bioanalysts1
- Clinical Scientists1
- Computational biologists1
- Curators1
- Data Manager1
- Data scientists1
- Database users1
- ECR1
- General Interest1
- Graduate Students1
- IT support1
- Imaging Core Facility Staff1
- Librarians1
- Life scientists1
- Life scientists with no or little knowledge of the ISMARA tool.1
- Modellers1
- Node Coordinators1
- OMERO trainers1
- OMERO users1
- PhD1
- PhD Students or young researchers in molecular biology and/or genetics with little or no background in bioinformatics.1
- PhD students in Genomics datascience1
- Policy makers1
- Post docs1
- Post-Doctoral Fellows1
- PostDocs1
- Postdoctoral Researchers1
- Principal Investigators1
- Professor1
- Researcher in life sciences1
- Student1
- Students, postdocs, and researchers, from any scientific environment (academia, facilities, companies, etc.) interested in viral data, as well as anyone looking for virion and viral genome images for use in teaching or publications.1
- System administrators1
- Technicians1
- Trainers1
- Users1
- beginner bioinformaticians1
- data curators1
- data manager1
- data managers1
- database managers1
- esearchers and research software engineers who would like to begin automating their analyses in workflows. 1
- experimental nanoscientists1
- geneticists1
- genomics researchers1
- operational manager1
- post-docs1
- researchers, educators, and research support staff1
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- Author
- Helena Rasche94
- Bérénice Batut93
- Saskia Hiltemann54
- Björn Grüning42
- Simon Gladman30
- Yvan Le Bras27
- Nate Coraor25
- Nicola Soranzo24
- Anton Nekrutenko23
- John Chilton23
- Marie Josse19
- Subina Mehta19
- Wendi Bacon18
- Katarzyna Kamieniecka17
- Krzysztof Poterlowicz17
- Anne Fouilloux16
- Anthony Bretaudeau16
- Fotis E. Psomopoulos15
- Mehmet Tekman15
- Paul Zierep15
- Bazante Sanders14
- Julia Jakiela13
- Mijke Jetten13
- Monique Zahn13
- The Carpentries13
- Anup Kumar12
- Katherine Do12
- Maria Doyle12
- Pavankumar Videm11
- Cristóbal Gallardo10
- Dave Clements10
- Donny Vrins10
- Khaled Jum'ah10
- Martin Čech10
- Celia van Gelder9
- Delphine Lariviere9
- James Johnson9
- Marius van den Beek9
- Anika Erxleben8
- Daniel Blankenberg8
- Kaivan Kamali8
- Robert Andrews8
- Branka Franicevic7
- Diana Pilvar7
- Joachim Wolff7
- Laura Cooper7
- Lucille Delisle7
- Patricia Palagi7
- Pratik Jagtap7
- Wolfgang Maier7
- Allegra Via6
- Andrew Mason6
- Anna Syme6
- Anne Pajon6
- Clemens Blank6
- Coline Royaux6
- ELIXIR Goblet Train the Trainers6
- Melanie Föll6
- Michael Charleston6
- Morgan Howells6
- Philippe Rocca-Serra6
- Sara Morsy6
- Valentin Loux6
- Xenia Perez Sitja6
- Alex Ostrovsky5
- Alexandre Cormier5
- Dechen Bhuming5
- Diana Chiang Jurado5
- Donat Agosti5
- Egon Willighagen5
- Emma Leith5
- Erwan Corre5
- Gildas Le Corguillé5
- Julia Giora5
- Kellie Snow5
- Korneel Hens5
- Laura Leroi5
- Marisa Loach5
- Mira Kuntz5
- Munazah Andrabi5
- Nick Juty5
- Plazi Verein5
- Polina Polunina5
- Saskia Lawson-Tovey5
- Solenne Correard5
- Stéphanie Robin5
- Alireza Khanteymoori4
- Amirhossein Naghsh Nilchi4
- Beatriz Serrano-Solano4
- Cyril Monjeaud4
- Daniela Schneider4
- Dominik Brilhaus4
- Engy Nasr4
- Federico Bianchini4
- Florian Heyl4
- Heleri Inno4
- Hélène Chiapello4
- Keiler Collier4
- Kevin Frey4
- Mallory Freeberg4
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- Contributor
- Saskia Hiltemann473
- Helena Rasche413
- Björn Grüning341
- Bérénice Batut199
- Nicola Soranzo157
- Martin Čech117
- Cristóbal Gallardo90
- Niall Beard83
- Anthony Bretaudeau77
- Nate Coraor66
- Wendi Bacon65
- Armin Dadras58
- Gildas Le Corguillé55
- William Durand54
- Simon Gladman50
- Marius van den Beek46
- Mehmet Tekman44
- Pavankumar Videm44
- Lucille Delisle42
- Teresa Müller42
- Yvan Le Bras42
- Marie Josse36
- Beatriz Serrano-Solano29
- Wolfgang Maier26
- Maria Doyle22
- Anne Fouilloux21
- Anup Kumar21
- Julia Jakiela20
- Tristan Reynolds18
- Khaled Jum'ah16
- Melanie Föll16
- Petros Kountouris16
- Subina Mehta16
- Marisa Loach15
- Paul Zierep15
- Pratik Jagtap15
- Simon Bray15
- Deepti Varshney14
- Bazante Sanders13
- Daniela Schneider13
- David López13
- Donny Vrins13
- Mira Kuntz13
- Anton Nekrutenko12
- Delphine Lariviere12
- Matthias Bernt12
- Pablo Moreno12
- Timothy J. Griffin12
- Gianmauro Cuccuru11
- Mélanie Petera11
- Peter van Heusden11
- Katarzyna Kamieniecka10
- Paul De Geest9
- John Chilton8
- Kaivan Kamali8
- Leonid Kostrykin8
- Verena Moosmann8
- Amirhossein Naghsh Nilchi7
- Anna Syme7
- Diana Chiang Jurado7
- Florian Heyl7
- Hans-Rudolf Hotz7
- Katherine Do7
- Melissa Burke7
- Morgan Howells7
- Tomas Klingström7
- Alexandre Cormier6
- Dave Clements6
- Ekaterina Polkh6
- Mallory Freeberg6
- Solenne Correard6
- Alex Ostrovsky5
- Alireza Khanteymoori5
- Bert Droesbeke5
- Catherine Bromhead5
- Enis Afgan5
- John Davis5
- Stéphanie Robin5
- Vassilios Ioannidis5
- Andrea Bagnacani4
- Clea Siguret4
- Coline Royaux4
- Daniel Sobral4
- Dave B.4
- Eli Chadwick4
- Fotis E. Psomopoulos4
- Phil Reed4
- Pinar Alper4
- Sotiroula Chatzimatthaiou4
- Tim Beck4
- Clemens Blank3
- David Philip Judge3
- Engy Nasr3
- Fabio Cumbo3
- Jennifer Hillman-Jackson3
- Joachim Wolff3
- Keiler Collier3
- Krzysztof Poterlowicz3
- Laura Leroi3
- Martijn Kersloot3
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- Resource type
- e-learning431
- slides140
- Training materials30
- Presentation28
- lessons26
- Slidedeck25
- Lecture16
- hands-on tutorial9
- Video8
- Slides6
- Tutorial6
- Exercise4
- Online material4
- video4
- Documentation3
- Handout3
- Scripts3
- Webinar3
- course materials3
- tutorial3
- Course materials2
- PDF2
- online course2
- slideck/ presentation2
- Carpentries style curriculum1
- Coding1
- Computational Biology1
- Jupyter notebooks1
- Learning pathway1
- Open educational resource1
- Poster1
- Recorded webinar1
- Recording1
- e-Learning1
- hackathon1
- scripts1
- tutorials1
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- Related resource
- Associated Training Datasets258
- Associated Workflows235
- Jupyter Notebook (with Solutions)28
- Jupyter Notebook (without Solutions)28
- Quarto/RMarkdown Notebook3
- Slides2
- Workshop recording2
- DMPonline1
- Data Stewardship Wizard1
- Data Visualisation (theory) 1
- DisProt1
- FAIR for busy biologists1
- FAIR in (biological) practice1
- R basics1
- RDMkit1
- Ready For BioData Management?1
- Video Walkthrough of the Poster1
- Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle1
- Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
- compareMS21
- recorded guidance on how to install a SciNote account1
- recorded intro to hackathon1
- recorded presentation on integration of ELNs in nanosciences1
- seq-seq-pan1
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- Node
- Netherlands44
- Estonia17
- Cyprus16
- Switzerland15
- United Kingdom13
- Belgium5
- France5
- Luxembourg5
- Portugal5
- Norway4
- Germany3
- Czech Republic2
- EMBL-EBI2
- Spain2
- Sweden2
- Denmark1
- Greece1
- Italy1
- Slovenia1
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- Collection
- HemaFAIR Training: Applying FAIR Principles in Hematology Research16
- ELIXIR Biodiversity Community5
- Elements of Data Management5
- RDMbites: Data management essentials5
- SARS-CoV-2 : Studying a new virus5
- PINK project4
- ELIXIR SIS-Containers - collection of training materials2
- 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
- ELIXIR hCNV community - collection of courses and materials.1
- ELIXIR Systems Biology Community: training events and materials1
- ELIXIR Toxicology Community1
- PHENotyping and EnviroTyping (PHENET training collection)1
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- Status
- Active86
- Under development1
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Competency level: Beginner

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