Materials - RDM

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- Scientific topic
- Algorithms108
- Computer programming108
- Data structures108
- Programming languages108
- Software development108
- Software engineering108
- FAIR data100
- Findable, accessible, interoperable, reusable data100
- Data management92
- Metadata management92
- Research data management (RDM)92
- Genome annotation84
- Exomes75
- Genomes75
- Genomics75
- Personal genomics75
- Synthetic genomics75
- Viral genomics75
- Whole genomes75
- Biodiversity71
- Comparative transcriptomics66
- Transcriptome66
- Transcriptomics66
- Bayesian methods53
- Biostatistics53
- Descriptive statistics53
- Gaussian processes53
- Inferential statistics53
- Markov processes53
- Multivariate statistics53
- Probabilistic graphical model53
- Probability53
- Statistics53
- Statistics and probability53
- Bioinformatics45
- Metagenomics42
- Shotgun metagenomics42
- Bottom-up proteomics41
- Discovery proteomics41
- MS-based targeted proteomics41
- MS-based untargeted proteomics41
- Metaproteomics41
- Peptide identification41
- Protein and peptide identification41
- Proteomics41
- Quantitative proteomics41
- Targeted proteomics41
- Top-down proteomics41
- Biological sequences36
- Sequence analysis36
- Sequence databases36
- Community analysis35
- Environmental microbiology35
- Microbial ecology35
- Microbiome35
- Molecular community analysis35
- Assembly34
- Sequence assembly34
- Computational ecology30
- Ecoinformatics30
- Ecological informatics30
- Ecology30
- Ecosystem science30
- Diffraction experiment27
- Imaging27
- Microscopy27
- Microscopy imaging27
- Optical super resolution microscopy27
- Photonic force microscopy27
- Photonic microscopy27
- Data mining25
- Pattern recognition25
- Antimicrobial stewardship22
- Medical microbiology22
- Microbial genetics22
- Microbial physiology22
- Microbial surveillance22
- Microbiological surveillance22
- Microbiology22
- Molecular infection biology22
- Molecular microbiology22
- DNA variation21
- Genetic variation21
- Genomic variation21
- Mutation21
- Polymorphism21
- Somatic mutations21
- Taxonomy20
- Active learning18
- Ensembl learning18
- Kernel methods18
- Knowledge representation18
- Machine learning18
- Neural networks18
- Recommender system18
- Reinforcement learning18
- Supervised learning18
- Unsupervised learning18
- Open science17
- Functional genome annotation15
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- Operation
- Data handling32
- File handling32
- File processing32
- Processing32
- Report handling32
- Utility operation32
- Data analysis11
- Data extraction4
- Data retrieval4
- Data retrieval (metadata)4
- Metadata retrieval4
- Retrieval4
- Data formatting2
- Data management planning2
- Data reformatting2
- Database search2
- File format conversion2
- File formatting2
- File reformatting2
- Format conversion2
- Search2
- Annotation1
- Data brokering1
- Data deposition1
- Data deposition brokering1
- Data submission1
- Database deposition1
- Database retrieval1
- Database submission1
- Quality control1
- Query1
- Query and retrieval1
- RNA-Seq analysis1
- Validation1
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- Tool
- Galaxy371
- FastQC35
- SAMtools26
- MultiQC25
- BWA21
- BEDTools17
- fastp16
- scikit-learn16
- JBrowse15
- REDCap15
- SCANPY15
- Falco14
- DeepTools13
- ggplot213
- BLAST12
- Cutadapt12
- QUAST12
- BUSCO11
- Galaxy Image Analysis11
- GEMINI10
- STAR10
- scikit-image10
- taxonomy_krona_chart10
- Data Stewardship Wizard9
- NanoPlot9
- Trimmomatic9
- Bandage8
- FASTX-Toolkit8
- FreeBayes8
- BCFtools7
- BamTools7
- msConvert7
- seqtk7
- Biopython6
- Flye6
- HISAT26
- MAFFT6
- MaxQuant6
- Minimap26
- Open Babel6
- RStudio6
- Trim Galore6
- Unicycler6
- Workflow4Metabolomics6
- gffread6
- DESeq25
- Galactic Circos5
- MetaPhlAn5
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- RSeQC5
- SRA Software Toolkit5
- anndata5
- annotatemyids5
- compute_sequence_length5
- kraken25
- xcms5
- Bowtie 24
- Bwa-mem24
- CellProfiler4
- Diamond4
- GOseq4
- KrakenTools4
- MACS4
- MSstats4
- Merqury4
- Newick Utilities4
- RDMkit4
- Salmon4
- StringTie4
- The Protein Data Bank (PDB)4
- UniProt4
- bx-python4
- gffcompare4
- mothur4
- snpEff4
- Apollo3
- Bakta3
- Bracken3
- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- DISEASES3
- DropletUtils3
- European Nucleotide Archive (ENA)3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterProScan (EBI)3
- OMArk3
- QualiMap3
- RDKit3
- SeqCode3
- SortMeRNA3
- Stacks3
- UCSC Genome Browser Utilities3
- Vcflib3
- dRep3
- export2graphlan3
- gfastats3
- humann3
- iqtree3
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- Standard database or policy
- European Nucleotide Archive2
- FAIRsharing2
- Ontology Lookup Service2
- PRoteomics IDEntifications database2
- RDA DMP Common Standard for Machine-Actionable Data Management Plans2
- STRING: functional protein association networks2
- Search Tool for Interactions of Chemicals2
- The European Genome-phenome Archive2
- Bioschemas1
- Cellosaurus1
- Common Workflow Language1
- FAIRtracks1
- Investigation Study Assay JSON1
- Investigation Study Assay Tabular1
- Minimum Information about Plant Phenotyping Experiment1
- ModelArchive1
- Research Object Crate1
- Resource Identification Portal 1
- Schema.org1
- The Observational Medical Outcomes Partnership Common Data Model1
- UniProt Knowledgebase1
- Worldwide Protein Data Bank1
- Zenodo 1
- data.eNanoMapper.net1
- eNanoMapper Ontology1
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- Content provider
- PaN Training1276
- GTN713
- Australian BioCommons90
- Glittr.org77
- ERGA Knowledge Hub55
- ELXIR-UK DaSH54
- DTLS - Dutch Techcentre For Life Sciences33
- Canadian Bioinformatics Workshops27
- Coding for Reproducible Research (CfRR)19
- ELIXIR Portugal16
- SIB Swiss Institute of Bioinformatics14
- VIB Training & Conferences12
- ELIXIR11
- ELIXIR Estonia10
- PerMedCoE6
- Barcelona Supercomputing Center (BSC)4
- ELIXIR Luxembourg4
- IFB French Institute of Bioinformatics4
- ELIXIR Norway3
- Novo Nordisk Foundation Center for Protein Research3
- University of Edinburgh3
- ELIXIR: The Czech Republic Node2
- European Bioinformatics Institute (EBI)2
- NanoCommons2
- SciLifeLab2
- Software Sustainability Institute2
- Centre for Digital Life Norway1
- Cloud-SPAN1
- Department of Bioinformatics - BiGCaT, Maastricht University1
- EOSC4Cancer1
- FRDN1
- Health-RI1
- InterMine1
- Pattern Institute1
- Seqera1
- University of Cambridge Bioinformatics Training1
- de.NBI1
- eNanoMapper1
- proteomicsML1
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- Keyword
- Hochschuldidaktik195
- QUADIS169
- Hochschullehre156
- Hochschule138
- Seminar128
- Kursmaterial114
- asynchron107
- Workshop103
- Template102
- Vorlage102
- Onlinelehre101
- synchron93
- blended learning89
- Profilehreplus88
- digital gestützte Lehre81
- Didaktik75
- Bioinformatics70
- Galaxy Server administration68
- Lehre59
- Open Science58
- Bereich A Lehr-Lern-Konzepte57
- OER55
- jupyter-notebook55
- Digitalisierung (Digitale Transformation, Digitaler Wandel)53
- Blended Learning52
- Foundations of Data Science52
- ProfiLehrePlus51
- FAIR50
- Open educational Resources50
- Transcriptomics50
- E-Learning (Learning on demand, Digitales Lernen)49
- biodiversity47
- Steckbrief46
- Development in Galaxy45
- Statistics and machine learning44
- Single Cell42
- microgalaxy42
- Proteomics41
- Genomics40
- Python40
- Data management39
- FAIR data39
- Bildung38
- data management37
- Digital gestützte Lehre36
- FAIR Data, Workflows, and Research34
- Open Access33
- RDM33
- workshop33
- Genome Annotation32
- Habitus32
- Wissenschaftsmanagement32
- Bildungsmanagement31
- Bourdieu31
- Habitus.Macht.Bildung31
- Macht31
- Microbiome31
- Soziologie31
- Weiterbildung31
- Ecology30
- Open Data30
- higher education29
- Using Galaxy and Managing your Data28
- Contributing to the Galaxy Training Material27
- Barrierefreiheit26
- FAIR Data26
- JMU Würzburg26
- university teaching26
- Assembly25
- Workflows25
- metagenomics25
- open25
- Data reuse24
- HAN24
- R24
- RUG22
- SURF22
- leermaterialen22
- workshopherontwerponderwijs22
- CBL21
- Examples21
- FAIR principles21
- Kommunikation21
- ansible21
- programming21
- ISP20
- Imaging20
- Kosten- und Finanzmanagement20
- Metadata20
- Open Educational Resources20
- Transkript20
- teaching and learning in higher education20
- teaching in higher education20
- teaching methods20
- Übersetzung20
- CfRR19
- Finanzmanagement19
- Kostenmanagement19
- Variant Analysis19
- git-gat19
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- Competency level
- Not specified1618
- Beginner714
- Intermediate173
- Advanced23
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- Licence
- Creative Commons Attribution 4.0 International
- License Not Specified2927
- Creative Commons Attribution Share Alike 4.0 International1724
- Creative Commons Attribution Non Commercial Share Alike 4.0 International632
- Creative Commons Attribution Non Commercial 4.0 International319
- Creative Commons Attribution No Derivatives 4.0 International241
- MIT License144
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International134
- Creative Commons Zero v1.0 Universal82
- GNU General Public License v3.0 only53
- Apache License 2.021
- BSD 3-Clause "New" or "Revised" License16
- Other (Not Open)16
- Creative Commons Attribution 1.0 Generic5
- Artistic License 2.02
- GNU Affero General Public License v3.0 only2
- GNU General Public License v2.0 only2
- BSD 2-Clause "Simplified" License1
- Creative Commons Attribution 2.0 Generic1
- Creative Commons Attribution No Derivatives 2.0 Generic1
- Creative Commons Attribution Non Commercial 2.0 Generic1
- Do What The F*ck You Want To Public License1
- European Union Public License 1.11
- Open Data Commons Attribution License v1.01
- Other (Open)1
- The Unlicense1
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- Target audience
- Students579
- Galaxy Administrators113
- Instructors52
- Researchers35
- Scientific community30
- PhD candidate24
- Data stewards20
- Academia/ Research Institution16
- Data Scientist16
- Data managers16
- Industry16
- Non-Profit Organisation16
- Healthcare13
- Bioinformaticians12
- PaN Community12
- Biologists10
- Life Science Researchers10
- PhD Students9
- Researcher8
- Clinicians7
- PhD candidates7
- Master students6
- Beginner5
- ExPaNDS and PaNOSC project members5
- Life scientists with programming skills5
- bioinformaticians5
- data stewards5
- scientists5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Bioinformatician4
- Data Managers4
- Data Scientists4
- Graduate Students4
- PI4
- PhD students4
- Post Docs4
- project manager4
- Biologists with little or no prior computational experience3
- Scientists3
- data managers3
- data steward / data manager3
- facility staff3
- Academics2
- Beginners2
- Bench biologists2
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Chemists2
- Computational biologists2
- Curators2
- Data Steward2
- Database users2
- Graduate students2
- Industry Professionals2
- Life Scientists2
- Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.2
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members2
- Postdocs and Staff members2
- Principal Investigators (PIs)2
- Research scientists2
- Trainers2
- instrument scientist2
- life science researchers2
- life scientists2
- plant researchers2
- policy officer2
- research data engineer2
- research data scientist2
- Anyone1
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Beginner informatics1
- Bioinformatician, Bioanalysts1
- Clinical Scientists1
- DMP writers1
- Data Manager1
- Data scientists1
- Developers wanting to distribute their MPI dependent software1
- ECR1
- EIP members1
- ELIXIR members1
- Early Career Researcher1
- General Interest1
- Graduates1
- HPC system maintainers wanting to enable MPI containers1
- IT support1
- Imaging Core Facility Staff1
- Librarians1
- Life scientists1
- Life scientists with no or little knowledge of the ISMARA tool.1
- Modellers1
- Node Coordinators1
- Novice users of HPC and anyone who expects to need to use HPC systems at some stage in their research1
- OMERO trainers1
- OMERO users1
- PaN users1
- PhD1
- PhD Students or young researchers in molecular biology and/or genetics with little or no background in bioinformatics.1
- PhD students in Genomics datascience1
- Policy makers1
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- Author
- Helena Rasche128
- Bérénice Batut111
- Saskia Hiltemann65
- Björn Grüning49
- Simon Gladman33
- Donat Agosti29
- Julia Giora29
- Plazi Verein29
- Yvan Le Bras29
- Anthony Bretaudeau28
- Anton Nekrutenko28
- SIB Swiss Institute of Bioinformatics28
- Nate Coraor27
- Subina Mehta26
- John Chilton25
- Nicola Soranzo25
- The Carpentries24
- Anne Fouilloux21
- Fotis E. Psomopoulos21
- Saskia Lawson-Tovey20
- Coding for Reproducible Research Initiative19
- Marie Josse19
- Wendi Bacon19
- Bazante Sanders18
- Katarzyna Kamieniecka18
- Krzysztof Poterlowicz18
- Laura Cooper17
- Mehmet Tekman17
- Paul Zierep16
- The Gulbenkian Training Programme in Bioinformatics16
- Cristóbal Gallardo15
- Samaha, Georgina15
- Pratik Jagtap14
- Dave Clements13
- Delphine Lariviere13
- Donny Vrins13
- Julia Jakiela13
- Maria Doyle13
- Mijke Jetten13
- Monique Zahn13
- Wolfgang Maier13
- Anup Kumar12
- James Johnson12
- Katherine Do12
- Marius van den Beek12
- Melanie Föll12
- Simon Bray12
- Khaled Jum'ah11
- Pavankumar Videm11
- Daniel Blankenberg10
- Fred Hutch Data Science Lab10
- Martin Čech10
- Anika Erxleben9
- Avans Hogeschool9
- Celia van Gelder9
- Egon Willighagen9
- Praveen Kumar9
- Anne Pajon8
- Diana Chiang Jurado8
- Diana Pilvar8
- Emma Leith8
- Joachim Wolff8
- Kaivan Kamali8
- Lucille Delisle8
- Robert Andrews8
- Sara Morsy8
- Stéphanie Robin8
- Timothy J. Griffin8
- Alex Ostrovsky7
- Alexandre Cormier7
- Anna Syme7
- Beecroft, Sarah7
- Branka Franicevic7
- Christopher Barnett7
- Erwan Corre7
- Florian Christoph Sigloch7
- Gildas Le Corguillé7
- Jeremy Goecks7
- Junhao Qiu7
- Laura Leroi7
- Leonid Kostrykin7
- Matthias Fahrner7
- Michael Charleston7
- Nadia Goué7
- Patricia Palagi7
- Paulo Cilas Morais Lyra Junior7
- Ray Sajulga7
- Williams, Sarah7
- Alexander Botzki6
- Allegra Via6
- Andrew Mason6
- Beatriz Serrano-Solano6
- Clemens Blank6
- Coline Royaux6
- Daniela Schneider6
- Deshpande, Nandan6
- ELIXIR Goblet Train the Trainers6
- Morgan Howells6
- Philippe Rocca-Serra6
- Polina Polunina6
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- Contributor
- Saskia Hiltemann594
- Helena Rasche504
- Björn Grüning433
- Bérénice Batut254
- Nicola Soranzo171
- Martin Čech130
- Anthony Bretaudeau106
- Cristóbal Gallardo104
- Niall Beard90
- Wendi Bacon78
- Nate Coraor71
- Armin Dadras66
- Pavankumar Videm65
- Gildas Le Corguillé63
- Marius van den Beek62
- William Durand59
- Simon Gladman54
- Teresa Müller48
- Beatriz Serrano-Solano47
- Lucille Delisle46
- Mehmet Tekman46
- Yvan Le Bras45
- Robert Andrews40
- Marie Josse37
- Wolfgang Maier36
- Melanie Föll35
- Anup Kumar34
- Munazah Andrabi34
- Simon Bray28
- Subina Mehta28
- Anne Fouilloux25
- Peter van Heusden24
- Donny Vrins23
- Maria Doyle23
- Tristan Reynolds21
- Julia Jakiela20
- Leonid Kostrykin20
- Bazante Sanders19
- Anton Nekrutenko18
- Deepti Varshney17
- Geert van Geest17
- Khaled Jum'ah17
- Paul Zierep17
- Delphine Lariviere16
- Petros Kountouris16
- Pratik Jagtap16
- Marisa Loach15
- Daniela Schneider14
- David López14
- Mira Kuntz14
- Mélanie Petera14
- Diana Chiang Jurado13
- Matthias Bernt13
- Candace Savonen12
- Pablo Moreno12
- Timothy J. Griffin12
- Carrie Wright11
- Dave Clements11
- Gianmauro Cuccuru11
- Katarzyna Kamieniecka11
- Stéphanie Robin11
- jhudsl-robot11
- John Chilton10
- Wandrille D.10
- actions-user10
- Anna Syme9
- Kate Isaac9
- Mallory Freeberg9
- Paul De Geest9
- Alexandre Cormier8
- Amirhossein Naghsh Nilchi8
- Florian Heyl8
- Hans-Rudolf Hotz8
- Kaivan Kamali8
- Melissa Burke8
- Solenne Correard8
- Tomas Klingström8
- Verena Moosmann8
- Allyson Lister7
- Christopher Barnett7
- Daniel Sobral7
- Enis Afgan7
- Katherine Do7
- Morgan Howells7
- Paulo Cilas Morais Lyra Junior7
- Bert Droesbeke6
- Catherine Bromhead6
- Clemens Blank6
- Deepak Tanwar6
- Ekaterina Polkh6
- Florian Christoph Sigloch6
- Linelle Abueg6
- Riccardo Massei6
- Alex Ostrovsky5
- Alireza Khanteymoori5
- Andrea Bagnacani5
- Clea Siguret5
- Elizabeth Humphries5
- Fabio Cumbo5
- John Davis5
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- Resource type
- e-learning561
- slides195
- tutorial49
- Presentation47
- lessons42
- Video40
- Training materials33
- video31
- Slidedeck27
- exercise27
- hands-on tutorial23
- Exercise17
- Documentation16
- Handout16
- Lecture16
- Scripts16
- Tutorial12
- Slides11
- Document9
- Online material4
- PDF4
- Webinar4
- tutorials4
- Recorded webinar3
- course materials3
- git3
- service3
- slideck/ presentation3
- Course materials2
- Learning pathway2
- Poster2
- Series of videos2
- online course2
- tool2
- youtube video2
- Carpentries style curriculum1
- Coding1
- Computational Biology1
- E-Learning1
- Jupyter notebooks1
- Open educational resource1
- Recording1
- Workshop1
- additional reading1
- case studies1
- didactic activities1
- docker1
- docker-compose1
- documenation1
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- hackathon1
- handbook1
- implementation guidelines1
- project deliverable1
- scripts1
- slide deck / presentation1
- software1
- workflow1
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- Related resource
- Associated Training Datasets333
- Associated Workflows309
- Jupyter Notebook (with Solutions)52
- Jupyter Notebook (without Solutions)52
- 2nd PaN EOSC Symposium6
- Quarto/RMarkdown Notebook6
- Slides4
- Associated deliverable on the ExPaNDS ontologies2
- DMPonline2
- DisProt2
- Research Data Management in Life Sciences2
- Workshop recording2
- ARROWSMITH1
- Booklet of presentations1
- Browse the PaNET ontology in BioPortal1
- DCAT V21
- Data Stewardship Wizard1
- Data Visualisation (theory) 1
- Event1
- FAIR for busy biologists1
- FAIR in (biological) practice1
- ICAT documentation1
- Jupyter Notebook1
- Materials on OSF1
- McStas1
- Overview of the Symposium1
- PaNET ontology documentation1
- R basics1
- RDMkit1
- RNA-seq data package1
- Ready For BioData Management?1
- SciCat GitHub1
- SciCat documentation1
- TELBE workflow1
- Video Walkthrough of the Poster1
- Video recording1
- Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle1
- Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
- compareMS21
- recorded guidance on how to install a SciNote account1
- recorded intro to hackathon1
- recorded presentation on integration of ELNs in nanosciences1
- seq-seq-pan1
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- Active222
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