Materials - RDM

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- Genome annotation210
- Exomes189
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- Comparative transcriptomics184
- Transcriptome184
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- MicroRNA sequencing162
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- FAIR data86
- Findable, accessible, interoperable, reusable data86
- Metagenomics73
- Shotgun metagenomics73
- Single-cell genomics62
- Single-cell sequencing62
- Bottom-up proteomics61
- Discovery proteomics61
- MS-based targeted proteomics61
- MS-based untargeted proteomics61
- Metaproteomics61
- Peptide identification61
- Protein and peptide identification61
- Proteomics61
- Quantitative proteomics61
- Targeted proteomics61
- Top-down proteomics61
- Data rendering57
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- Antimicrobial stewardship55
- Medical microbiology55
- Microbial genetics55
- Microbial physiology55
- Microbial surveillance55
- Microbiological surveillance55
- Microbiology55
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- Operation
- Annotation9
- Data visualisation5
- Molecular visualisation5
- Plotting5
- Rendering5
- Visualisation5
- Functional enrichment analysis4
- GSEA4
- Gene set analysis4
- Gene-set enrichment analysis4
- Gene-set over-represenation analysis4
- Methylation analysis4
- Methylation profile analysis4
- Allele calling3
- Exome variant detection3
- Genome variant detection3
- Germ line variant calling3
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- de novo mutation detection3
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- Galaxy368
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- FastQC35
- SAMtools26
- MultiQC25
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- fastp16
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- JBrowse15
- SCANPY15
- Falco14
- DeepTools13
- BLAST12
- Cutadapt12
- QUAST12
- BUSCO11
- Galaxy Image Analysis11
- ggplot211
- GEMINI10
- STAR10
- scikit-image10
- taxonomy_krona_chart10
- FreeBayes9
- NanoPlot9
- Trimmomatic9
- Bandage8
- FASTX-Toolkit8
- BCFtools7
- BamTools7
- Biopython7
- HISAT27
- msConvert7
- seqtk7
- Flye6
- MAFFT6
- MaxQuant6
- RStudio6
- Trim Galore6
- Unicycler6
- Workflow4Metabolomics6
- gffread6
- Galactic Circos5
- MetaPhlAn5
- Minimap25
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- Open Babel5
- RSeQC5
- SRA Software Toolkit5
- StringTie5
- anndata5
- annotatemyids5
- compute_sequence_length5
- gffcompare5
- kraken25
- xcms5
- Bowtie 24
- Bwa-mem24
- CellProfiler4
- DESeq24
- Diamond4
- GOseq4
- KrakenTools4
- MACS4
- MSstats4
- Merqury4
- Newick Utilities4
- Salmon4
- UniProt4
- bx-python4
- mothur4
- snpEff4
- Apollo3
- Bakta3
- Bracken3
- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- DropletUtils3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterProScan (EBI)3
- OMArk3
- QualiMap3
- RDKit3
- SeqCode3
- SortMeRNA3
- Stacks3
- The Protein Data Bank (PDB)3
- UCSC Genome Browser Utilities3
- Vcflib3
- bed to protein map3
- customProDB3
- dRep3
- export2graphlan3
- gfastats3
- humann3
- iqtree3
- lofreq3
- pyGenomeTracks3
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- Standard database or policy
- NCBI Gene4
- Bioconductor3
- Gene3D1
- HumanMine1
- Integrated resource of protein families, domains and functional sites1
- PRINTS1
- SUPERFAMILY1
- Structural Classification Of Proteins1
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- Content provider
- PaN Training6680
- Glittr.org839
- GTN832
- European Bioinformatics Institute (EBI)468
- Bioconductor262
- IFB French Institute of Bioinformatics138
- ERGA Knowledge Hub128
- GOBLET106
- SIB Swiss Institute of Bioinformatics84
- Australian BioCommons83
- Bioinformatics Visualization72
- Software Carpentry70
- NGS Registry60
- Data Carpentry34
- Khan Academy Statistics32
- BY-COVID31
- VIB Bioinformatics Core29
- Canadian Bioinformatics Workshops26
- VIB Training & Conferences20
- Coding for Reproducible Research (CfRR)19
- VBCF BioComp12
- Bioschemas9
- Coursera9
- Genome 3D8
- eNanoMapper8
- Danish National Health Data Science Sandbox5
- InterMine5
- NanoCommons2
- BioData.pt1
- ELIXIR1
- proteomicsML1
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- Keyword
- R351
- Python257
- hbovpk224
- Hochschuldidaktik218
- Hochschullehre193
- QUADIS172
- Transcriptomics158
- Genomics155
- Hochschule140
- Didaktik134
- Seminar130
- RNA-seq126
- Elementar+123
- Kursmaterial122
- Next generation sequencing119
- Workshop117
- Vorlage107
- asynchron107
- biodiversity106
- Template104
- Barrierefreiheit102
- Data management102
- Onlinelehre101
- FAIR data95
- blended learning93
- synchron93
- Data science89
- Profilehreplus88
- Bioinformatics87
- CHE86
- jupyter-notebook85
- Statistics84
- digital gestützte Lehre82
- microgalaxy80
- OER79
- Machine learning78
- Educación física77
- Lehre77
- Reproducibility71
- Entrenamiento70
- Galaxy Server administration68
- HBOVPK65
- Verpleegkunde65
- gaming64
- Unix/Linux63
- Spiel (Spielen, Spiele)62
- Behinderung (Behinderungen)61
- Single-cell sequencing61
- FAIR58
- Open educational Resources58
- Bereich A Lehr-Lern-Konzepte57
- Data visualization57
- maan kasvukunto57
- Digitalisierung (Digitale Transformation, Digitaler Wandel)56
- Blended Learning55
- work-in-progress55
- Jukka Rajala54
- Foundations of Data Science52
- ProfiLehrePlus52
- Version control52
- Workflows52
- metagenomics52
- E-Learning (Learning on demand, Digitales Lernen)51
- HU51
- Proteomics51
- Open Science50
- Studiehandleiding50
- Variant analysis50
- HAN49
- Steckbrief48
- Deporte47
- luomu47
- Digitalisierung46
- Statistics and machine learning46
- Development in Galaxy45
- HSLeiden44
- Salud44
- Bildung43
- training43
- Genome assembly42
- Single Cell42
- programming41
- Digitale Lehre40
- Zorgverlener40
- luomutuotanto40
- Weiterbildung39
- avans39
- workshop38
- Digitale Spiele37
- Galaxy37
- ICF37
- Medienpädagogik37
- Actividad física36
- Digital gestützte Lehre36
- General36
- Genome annotation36
- Inklusion36
- QC36
- tietokortit36
- Kommunikation35
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- Competency level
- Not specified9251
- Beginner652
- Intermediate153
- Advanced20
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- Licence
- License Not Specified3764
- Creative Commons Attribution 4.0 International2271
- Creative Commons Attribution Share Alike 4.0 International1663
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International800
- Creative Commons Attribution Non Commercial Share Alike 4.0 International681
- Creative Commons Attribution Non Commercial 4.0 International357
- Creative Commons Attribution No Derivatives 4.0 International246
- MIT License133
- Creative Commons Zero v1.0 Universal74
- GNU General Public License v3.0 only47
- BSD 3-Clause "New" or "Revised" License16
- Apache License 2.015
- CeCILL Free Software License Agreement v2.13
- Artistic License 2.02
- GNU Affero General Public License v3.0 only2
- Do What The F*ck You Want To Public License1
- The Unlicense1
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- Target audience
- Students547
- PhD students168
- Clinicians121
- Galaxy Administrators113
- Instructors52
- Novice44
- post-docs43
- Life Science Researchers35
- Intermediate26
- beginner bioinformaticians24
- Researchers19
- Bench biologists17
- Biologists16
- Biologists, Genomicists, Computer Scientists16
- Beginners13
- beamtime users, researchers, PhD students13
- Graduate Students12
- Post-Doctoral Fellows12
- bioinformaticians9
- scientists9
- Life scientists8
- PaN Community7
- biocurators7
- Photon Community6
- Life scientists with programming skills5
- PhD5
- crystallography5
- neutron community5
- General Interest4
- Laboratory technicians4
- Scientific community4
- Trainers4
- Veterinarians4
- archaeologists4
- biologists4
- material scientists4
- postgrad4
- spectroscopy4
- ExPaNDS and PaNOSC project members3
- PhD Students3
- life scientists3
- postdoc3
- research data scientist3
- Beginner2
- Chemists2
- Life Scientists2
- Materials scientists2
- PaN users2
- Physicists2
- Postgraduate students2
- Scientists2
- Undergraduate students2
- biology and bioinformatics sophomore undergraduates2
- data stewards2
- diffraction2
- imaging2
- postdocs2
- software developers, bioinformaticians2
- Anyone wants to start using the Unix/Linux OS1
- Bachelor students1
- Beginner informatics1
- Bioinformatician1
- Bioinformatics1
- Biomedical researchers1
- Clinical Scientists1
- Educators1
- High School Students1
- Lecturers1
- Life sciences1
- Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.1
- Master students1
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- Users1
- adults1
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- data curator1
- data managers1
- early stage phytopathogen researchers1
- engineers1
- experimeintal biologist researchers1
- field biologist researchers1
- general public1
- geneticists1
- healthcare professionals1
- high school1
- master1
- medical researchers1
- paleontologists1
- plant researchers1
- postdoctoral researchers1
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- Author
- Helena Rasche128
- SIB Swiss Institute of Bioinformatics112
- Bérénice Batut111
- Martin Morgan97
- Saskia Hiltemann66
- The Carpentries Incubator64
- Björn Grüning49
- bioinformatics.ca35
- Simon Gladman33
- bebatut32
- bgruening32
- Yvan Le Bras29
- Anthony Bretaudeau28
- Anton Nekrutenko28
- Nate Coraor27
- Subina Mehta27
- John Chilton25
- Nicola Soranzo25
- Teaching materials at the Harvard Chan Bioinformatics Core25
- The Carpentries25
- NBIS - National Bioinformatics Infrastructure Sweden22
- Anne Fouilloux21
- Fotis E. Psomopoulos21
- Michelle Brazas21
- posit-conf-202321
- Coding for Reproducible Research Initiative19
- Data Carpentry19
- Marie Josse19
- The Gulbenkian Training Programme in Bioinformatics19
- Wendi Bacon19
- posit::conf(2024)19
- Bazante Sanders18
- Terri Attwood18
- UC Davis Bioinformatics Core Training Page18
- Mehmet Tekman17
- Wandrille Duchemin17
- shiltemann17
- Paul Zierep16
- Cristóbal Gallardo15
- Samaha, Georgina15
- Pratik Jagtap14
- nekrut14
- CRUK CI Bioinformatics Core13
- Dave Clements13
- Delphine Lariviere13
- Donny Vrins13
- Fred Hutch Data Science Lab13
- James Johnson13
- Katherine Do13
- Maria Doyle13
- Wolfgang Maier13
- Anup Kumar12
- Jenny Drnevich @jenny12
- Katarzyna Kamieniecka12
- Krzysztof Poterlowicz12
- Marius van den Beek12
- Melanie Föll12
- Simon Bray12
- András Aszódi11
- Geert van Geest11
- Julia Jakiela11
- Pavankumar Videm11
- Sundeep Agarwal11
- Various11
- Canadian Bioinformatics Workshops10
- Daniel Blankenberg10
- Khaled Jum'ah10
- Martin Čech10
- Anika Erxleben9
- Avans Hogeschool9
- ELIXIR Estonia9
- Lucille Delisle9
- MolSSI Education9
- Praveen Kumar9
- Sergio Martínez Cuesta9
- allegra.via Via9
- rstudio::conf(2022)9
- Anne Pajon8
- Bastian Schiffthaler @bastian8
- Diana Chiang Jurado8
- Emma Leith8
- Joachim Wolff8
- Kaivan Kamali8
- Nicolas Delhomme @delhomme8
- Patricia Palagi8
- Stéphanie Robin8
- Timothy J. Griffin8
- Wolfgang Huber8
- pajanne8
- Alex Ostrovsky7
- Alexandre Cormier7
- Allegra Via7
- Anna Syme7
- Beatriz Serrano-Solano7
- Beecroft, Sarah7
- Biocore@CRG7
- Bioinformatics, Rockefeller University7
- Christopher Barnett7
- Erwan Corre7
- Florian Christoph Sigloch7
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- Contributor
- Saskia Hiltemann590
- Helena Rasche496
- Björn Grüning425
- Bérénice Batut263
- Nicola Soranzo180
- Martin Čech129
- Anthony Bretaudeau108
- Cristóbal Gallardo104
- Niall Beard90
- Toby Hodges82
- Wendi Bacon73
- Nate Coraor70
- François Michonneau69
- Armin Dadras66
- Erin Becker63
- Gildas Le Corguillé63
- Marius van den Beek62
- William Durand59
- Zhian N. Kamvar59
- Mine Cetinkaya-Rundel56
- Katrin Leinweber54
- Simon Gladman54
- Raniere Silva53
- Tracy Teal53
- W. Trevor King52
- Andy Boughton51
- maneesha51
- Katie Anne Mills48
- Maxim Belkin48
- Pavankumar Videm48
- Teresa Müller48
- Beatriz Serrano-Solano47
- Lucille Delisle46
- Mehmet Tekman46
- Yvan Le Bras45
- David Pérez-Suárez44
- Gabriel A. Devenyi44
- Canadian Bioinformatics Workshops43
- Abby Cabunoc Mayes42
- EvanWill42
- Ian Lee42
- Jon Pipitone42
- Jonah Duckles42
- Michael Hansen42
- Piotr Banaszkiewicz42
- Brandon Curtis41
- David Mawdsley41
- Greg Wilson41
- Jemma Stachelek41
- Remi Rampin41
- Allen Lee40
- Andrew Sanchez40
- Michael R. Crusoe40
- Jeff Oliver39
- Joel Nothman39
- Nick Young39
- naught10139
- James Allen38
- Rémi Emonet38
- William L. Close38
- Rayna M Harris37
- Marie Josse36
- Wolfgang Maier36
- Melanie Föll35
- Sarah Brown35
- Gerard Capes34
- Anup Kumar33
- Maria Doyle33
- Renato Alves31
- trk31
- Ana Conrado29
- K.E. Koziar29
- Stephan Druskat29
- Christina K.28
- Subina Mehta28
- Alex Whan27
- Simon Bray27
- Anne Fouilloux26
- Paula Andrea Martinez26
- Michael Joseph25
- Anthony Gitter24
- João Rodrigues24
- Peter van Heusden24
- Donny Vrins23
- Geert van Geest23
- Robert Davey22
- Sarah Stevens22
- Julia Jakiela21
- actions-user21
- Henry Schreiner20
- Hilmar Lapp20
- Bazante Sanders19
- The Gulbenkian Training Programme in Bioinformatics19
- Tristan Reynolds19
- Anton Nekrutenko18
- Leonid Kostrykin18
- Paola Prieto18
- Aaron O'Leary17
- C. Titus Brown17
- Deepti Varshney17
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- e-learning669
- Recorded webinar301
- slides195
- Tutorial75
- Video72
- Talk53
- Course materials48
- tutorial48
- video44
- hands-on tutorial27
- exercise26
- service22
- Slides18
- Poster16
- Slideshow12
- Book7
- lessons6
- Lesson4
- Presentation3
- documenation3
- Training materials2
- jupyter notebook2
- online tutorial2
- Document1
- Documentation1
- E-Learning1
- Jupyter notebooks1
- Online tutorial1
- ViralZone1
- e-Learning1
- flashcards1
- git1
- handbook1
- presentation1
- scientific article1
- tool1
- tutorials1
- wiki1
- workflow1
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- Related resource
- Associated Training Datasets332
- Associated Workflows308
- Jupyter Notebook (with Solutions)54
- Jupyter Notebook (without Solutions)54
- Input datasets34
- Associated slides9
- 2nd PaN EOSC Symposium6
- Development in Galaxy slides6
- Quarto/RMarkdown Notebook6
- Proteomics dataset5
- Sequence analysis dataset5
- Transcriptomics dataset5
- Assembly dataset4
- Variant Analysis dataset4
- Assembly slides3
- Slides3
- ChIP-Seq data analysis dataset2
- Epigenetics dataset2
- Galaxy Server administration slides2
- Genome Annotation dataset2
- Metagenomics dataset2
- Sequence analysis slides2
- Booklet of presentations1
- Colloquia list1
- Contributing to the Galaxy Training Material slides1
- Documentation1
- Genome Annotation slides1
- ICAT search API implementation1
- Introduction to Galaxy Analyses dataset1
- Introduction to Galaxy dataset1
- Jupyter Notebook1
- McStas1
- Overview of the Symposium1
- Part 101
- Part 2a1
- Part 2b1
- Part 31
- Part 41
- Part 51
- Part 61
- Part 71
- Part 81
- Part 91
- Recoding1
- Reference search API implementation1
- SciCat search API implementation1
- Scientific article1
- Statistics dataset1
- TELBE workflow1
- Transcriptomics slides1
- User Interface and Features dataset1
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- Switzerland1082
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- United Kingdom65
- Belgium49
- Germany36
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- Collection
- ELIXIR Biodiversity Community7
- PINK project5
- ELIXIR Federated Human Data Community4
- ELIXIR Systems Biology Community: training events and materials4
- ELIXIR SIS-Containers - collection of training materials2
- ELIXIR Toxicology Community2
- Single-cell Omics Community - collection of courses and materials2
- ELIXIR hCNV community - collection of courses and materials.1
- VIP138 SLOT Online Terbaik saat ini di Indonesia1
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- Active132
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