Materials - RDM

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- Scientific topic
- Data management82
- Metadata management82
- Research data management (RDM)82
- FAIR data79
- Findable, accessible, interoperable, reusable data79
- Bioinformatics55
- Biodiversity29
- Data mining25
- Pattern recognition25
- Cloud computing22
- Computer science22
- HPC22
- High performance computing22
- High-performance computing22
- Open science20
- Data rendering14
- Data visualisation14
- Biomedical informatics12
- Clinical informatics12
- Health and disease12
- Health informatics12
- Healthcare informatics12
- Medical informatics12
- Exomes10
- Genome annotation10
- Genomes10
- Genomics10
- Personal genomics10
- Synthetic genomics10
- Viral genomics10
- Whole genomes10
- Data archival8
- Data archiving8
- Data curation8
- Data curation and archival8
- Data preservation8
- Database curation8
- Research data archiving8
- Active learning7
- Ensembl learning7
- Kernel methods7
- Knowledge representation7
- Machine learning7
- Neural networks7
- Recommender system7
- Reinforcement learning7
- Supervised learning7
- Unsupervised learning7
- Algorithms6
- Applied ontology6
- Biomathematics6
- Computational biology6
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- Mathematical biology6
- Ontologies6
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- Terminology6
- Theoretical biology6
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- Tool interoperability6
- Upper ontology6
- Virology6
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- Biological processes5
- Comparative transcriptomics5
- Molecular biology5
- Transcriptome5
- Transcriptomics5
- Aerobiology4
- Bayesian methods4
- Behavioural biology4
- Biological modelling4
- Biological rhythms4
- Biological science4
- Biological system modelling4
- Biology4
- Biostatistics4
- Bottom-up proteomics4
- Chronobiology4
- Cryobiology4
- Data protection4
- Descriptive statistics4
- Discovery proteomics4
- Gaussian processes4
- Inferential statistics4
- Lipidomics4
- MS-based targeted proteomics4
- MS-based untargeted proteomics4
- Markov processes4
- Metaproteomics4
- Multivariate statistics4
- Peptide identification4
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- Operation
- Data handling11
- File handling11
- File processing11
- Processing11
- Report handling11
- Utility operation11
- Data extraction7
- Data retrieval7
- Data retrieval (metadata)7
- Metadata retrieval7
- Retrieval7
- Database retrieval6
- Query6
- Query and retrieval6
- Data visualisation5
- Molecular visualisation5
- Plotting5
- Rendering5
- Visualisation5
- Database search4
- Mathematical modelling4
- Modelling and simulation4
- Search4
- Data management planning3
- Normalisation3
- Standardisation3
- Standardisation and normalisation3
- Data analysis2
- Design2
- Peptide database search2
- Peptide identification2
- Peptide-spectrum-matching2
- Quality control2
- Validation2
- Classification1
- Data brokering1
- Data deposition1
- Data deposition brokering1
- Data formatting1
- Data reformatting1
- Data submission1
- Database deposition1
- Database submission1
- Expression analysis1
- Expression data analysis1
- File format conversion1
- File formatting1
- File reformatting1
- Format conversion1
- Functional genome annotation1
- Gene expression analysis1
- Gene expression data analysis1
- Gene expression regulation analysis1
- Genome annotation1
- Metagenome annotation1
- Metagenomic inference1
- Microarray data analysis1
- Multiple alignment1
- Multiple sequence alignment1
- Ontology browsing1
- Ontology visualisation1
- Protein expression analysis1
- Protein secondary structure visualisation1
- RNA secondary structure visualisation1
- Sequence classification1
- Structural genome annotation1
- Structure rendering1
- Structure visualisation1
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- Tool
- Data Stewardship Wizard8
- RDMkit5
- COPASI4
- RStudio4
- European Nucleotide Archive (ENA)2
- Ontology Lookup Service2
- UCSC Genome Browser2
- ViralZone2
- ggplot22
- AlphaFold 21
- BEDTools1
- BIIGLE1
- BioContainers1
- Bioconductor1
- BridgeDb1
- CARNIVAL1
- CellNOptR1
- Cellosaurus1
- DESeq1
- DESeq21
- EDAM-Browser1
- Enrichr1
- FastQC1
- GSEA1
- Galaxy1
- GlyConnect1
- ISMARA1
- MSFragger1
- MaBoSS1
- Minimap21
- MultiQC1
- Nextflow1
- OMERO1
- PASTEClassifier1
- PathVisio1
- PhysiCell1
- ProteinProspector1
- QualiMap1
- REPET1
- REXdb1
- SAMtools1
- SEEK1
- SRA1
- STAR1
- Salmon1
- Trim Galore1
- V-pipe1
- WebMaBoSS1
- WikiPathways1
- Zooma1
- bio.tools1
- biomaRt1
- biovalidator1
- compareMS21
- nextstrain.org1
- nf-core-rnaseq1
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- Standard database or policy
- DisProt2
- European Nucleotide Archive2
- FAIRsharing2
- Ontology Lookup Service2
- PRoteomics IDEntifications database2
- RDA DMP Common Standard for Machine-Actionable Data Management Plans2
- The European Genome-phenome Archive2
- Cellosaurus1
- Common Workflow Language1
- FAIR sharing1
- Investigation Study Assay JSON1
- Investigation Study Assay Tabular1
- ModelArchive1
- Research Object Crate1
- Resource Identification Portal 1
- The FAIR Principles1
- The Observational Medical Outcomes Partnership Common Data Model1
- UniProt Knowledgebase1
- Worldwide Protein Data Bank1
- Zenodo 1
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- Content provider
- Australian BioCommons83
- PaN Training38
- SIB Swiss Institute of Bioinformatics30
- ELIXIR14
- VIB Training & Conferences13
- ELIXIR Estonia12
- NBIS9
- Bioconductor6
- ELIXIR Norway6
- PerMedCoE6
- UNIVERSE-HPC project5
- LIPID MAPS4
- Barcelona Supercomputing Center (BSC)3
- BioData.pt3
- CINECA PROJECT3
- Centre for Genomic Regulation (CRG)3
- Pattern Institute3
- University of Edinburgh3
- de.NBI3
- CSC - IT Center for Science2
- ELIXIR: The Czech Republic Node2
- ELXIR-UK DaSH2
- SciLifeLab2
- Software Sustainability Institute2
- The Carpentries2
- COG-Train1
- Centre for Digital Life Norway1
- Cloud-SPAN1
- DTLS - Dutch Techcentre For Life Sciences1
- ELIXIR-SI eLearning Platform (EeLP)1
- EOSC4Cancer1
- European Bioinformatics Institute (EBI)1
- ExCALIBUR1
- Fraunhofer FIT1
- Health-RI1
- IFB French Institute of Bioinformatics1
- Seqera1
- WikiPathways1
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- Keyword
- Bioinformatics69
- FAIR26
- Data reuse22
- FAIR Data22
- FAIR principles22
- Open Science20
- PaNOSC20
- Data management19
- Workflows19
- Genomics18
- Metadata17
- HemaFAIR16
- Online Repository16
- PaN16
- Research Data Management14
- data management14
- discovery14
- Data mining13
- Python13
- Data sharing12
- Analysis11
- Clinical data11
- Data Management11
- European research projects11
- Nextflow11
- CONVERGE10
- Data10
- FAIR Data, Workflows, and Research10
- Photon and Neutron10
- RDF9
- Data analysis8
- Deep learning8
- Knowledge graph8
- Research software8
- Data Management Plan7
- GoldenGATE Imagine7
- HPC7
- Machine Learning7
- RSE7
- RStudio7
- SARS-CoV-27
- Data extraction6
- Data processing6
- Data visualisation6
- Interoperability6
- Open science6
- Query data6
- R6
- Reproducibility6
- SPARQL6
- SciCat6
- Transcriptomics6
- AI5
- Artificial Intelligence5
- DMP5
- Data Analysis5
- Galaxy Australia5
- HELIOS5
- Licensing5
- Ontology5
- Programming5
- Protein design5
- README5
- Rare Diseases5
- Standards5
- lipids5
- Bioinformatics http://edamontology.org/topic_00914
- Command line4
- Computational modelling4
- Data Life Cycle4
- Data Stewardship Wizard4
- Data Visualization4
- Databases4
- ELIXIR4
- Genome assembly4
- Healthcare4
- Intrinsically disordered proteins4
- Linux4
- Mass spectrometry4
- Metagenomics4
- Ontologies4
- Open Data4
- Photon science4
- Phylogenetics4
- Proteomics4
- RDM4
- RNA-seq4
- Structural Biology4
- Structural biology4
- Taxonomic concepts4
- Taxonomy4
- Training4
- TreatmentBank4
- Variant calling4
- X-rays4
- coding skills4
- genomics4
- lipid maps4
- lipidmaps4
- lipidomics4
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- Competency level
- Not specified155
- Beginner143
- Intermediate66
- Advanced11
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- Licence
- Creative Commons Attribution 4.0 International222
- License Not Specified75
- Creative Commons Attribution Share Alike 4.0 International29
- MIT License14
- Creative Commons Attribution Non Commercial Share Alike 4.0 International12
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International6
- Creative Commons Attribution 1.0 Generic4
- Creative Commons Attribution Non Commercial 4.0 International3
- Creative Commons Zero v1.0 Universal3
- Creative Commons Attribution No Derivatives 4.0 International2
- GNU General Public License v3.0 only2
- Creative Commons Attribution 2.0 Generic1
- Creative Commons Attribution No Derivatives 2.0 Generic1
- Creative Commons Attribution Non Commercial 2.0 Generic1
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- Target audience
- Researchers34
- Students31
- Scientific community29
- Bioinformaticians25
- Data stewards21
- Data Managers18
- Data Scientist16
- Data Scientists16
- Data managers16
- Scientists15
- PhD Students14
- PhD candidates14
- Researcher in life sciences13
- Research Scientists12
- Biomedical Researchers11
- Life Science Researchers10
- Researcher10
- Beginner9
- Biologists9
- Clinicians8
- Bench biologists6
- Bioinformatician6
- Computational biologists6
- biologists5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists with little or no prior computational experience4
- Graduate Students4
- Life Scientists4
- PI4
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members4
- Photon Community4
- archaeologists4
- bioinformaticians4
- crystallography4
- material scientists4
- neutron community4
- spectroscopy4
- Bioinformatician, Bioanalysts3
- Chemists3
- Curators3
- Data Steward3
- Database users3
- Graduate students3
- Post Docs3
- Trainers3
- genomics researchers3
- life science researchers3
- modelers3
- research software engineers and researchers writing code3
- scientists3
- Beginners2
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Clinical Scientists2
- Data Manager2
- ELIXIR members2
- Genomics data science PhD students2
- Laboratory technicians2
- Life scientists2
- Life scientists with programming skills2
- Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.2
- Materials scientists2
- Ontologists2
- Physicists2
- Postdocs and Staff members2
- Principal Investigators (PIs)2
- Research scientists2
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA2
- Training Coordinators2
- Training Designers2
- Training Organisers2
- Training instructors2
- Veterinarians2
- beginner bioinformaticians2
- biocurators2
- diffraction2
- imaging2
- life scientists2
- plant researchers2
- researchers2
- Academics1
- Analysts1
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Beginner informatics1
- Beginners in statistics1
- Biologists and bioinformaticians1
- Biologists interested in learning about RNA-seq1
- Biologists, Genomicists, Computer Scientists1
- Biomedical researchers1
- Bioscientists1
- Biotechnology Companies1
- DMP writers1
- Data scientists1
- Developers1
- ECR1
- ELIXIR member1
- Early Career Researcher1
- Healthcare professionals1
- Imaging Core Facility Staff1
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- Author
- Donat Agosti29
- Julia Giora29
- Plazi Verein29
- Samaha, Georgina15
- Monique Zahn13
- Personalized Health Informatics Group12
- Diana Pilvar8
- Beecroft, Sarah7
- Priit Adler7
- Deshpande, Nandan6
- Egon Willighagen6
- Jeremy Cohen6
- Steve Crouch6
- Vasundra Touré6
- Williams, Sarah6
- Federica Quaglia5
- Goudey, Benjamin5
- Gustafsson, Johan5
- Heleri Inno5
- Willet, Cali5
- Barugahare, Adele4
- Federico Bianchini4
- Geaghan, Michael4
- Hall, Grace4
- Janick Mathys4
- Jaya, Frederick4
- Mijke Jetten4
- Morgan, Steven4
- Nazeefa Fatima4
- Nelson, Tiffanie4
- Price, Gareth4
- Alexander Botzki3
- Chew, Tracy3
- Chung, Jessica3
- David Palecek3
- Elin Kronander3
- Erik Hedman3
- Karel Berka3
- Korbinian Bösl3
- Manuel Lera-Ramirez3
- Mori, Giorgia3
- Niclas Jareborg3
- O'Brien, Mitchell3
- Oliver Knodel (HZDR)3
- Ronald Cornet3
- Toni Hermoso Pulido3
- UGent3
- VLIZ3
- Al Bkhetan, Ziad2
- Aleksandra Nenadic2
- Annabel Cansdale2
- Annalisa Landi2
- Antczak, Magdalena2
- BioRDM2
- Birkinshaw, Richard2
- Brian Klahn2
- Cesar Bernabe2
- Daniel Faria2
- Davide Cirillo2
- Deepak Unni2
- Dipl.-Inform. Bernd Klein2
- Emma Rand2
- Erik Hjerde2
- Espen Mikal Robertsen2
- Espen Åberg2
- Evelyn Greeves2
- Freytag, Saskia2
- Gagalova, Kristina2
- Giovanni Pizzi2
- Graham, Erin2
- Grinter, Rhys2
- Grégoire Rossier2
- Hakkaart, Chris2
- Harrison, Paul2
- Heinz Stockinger2
- Huynh, Minh2
- Ihsan, Maira2
- Illimar Rekand2
- Ip, Alex2
- Jessica Lindvall2
- Jorge Buenabad-Chavez2
- Juan Camilo Arboleda Rivera2
- Julia Dohle2
- Keywan Hassani-Pak2
- Klaas Vandepoele2
- Liyanage, Kisaru2
- Lu, Ching-Yu2
- Luca Cozzuto2
- Lupat, Richard2
- Mackay, Joel2
- Makunin, Igor2
- Marian Novotny2
- Markus Englund2
- Matigian, Nicholas2
- Mattias Strömberg2
- Michiel Van Bel2
- Mónica Cano Abadía2
- Nicola Marzari2
- O'Brien, Mitchell J2
- Paul Tafforeau2
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- Contributor
- Petros Kountouris16
- Elin Kronander8
- Sabine Österle8
- Wolmar Nyberg Åkerström8
- Markus Englund7
- Mattias Strömberg7
- Niclas Jareborg7
- Stephan Nylinder7
- Yvonne Kallberg7
- Erik Hedman6
- Vassilios Ioannidis5
- Sotiroula Chatzimatthaiou4
- Martijn Kersloot3
- Vasundra Touré3
- Diana Pilvar2
- Emma Barnes2
- Guillaume Gaisne2
- James Chong2
- Marco Roos2
- Ronald Cornet2
- Software Sustainability Institute2
- Sven Twardziok2
- Tuur Muyldermans2
- University of York2
- Abeni Wickham1
- Alejandra Delfin-Rossaro1
- Alexander Botzki1
- Alexandra Grebe de Baron1
- Alison Harper1
- Allyson Lister1
- Amanda Klein1
- Amos Bairoch1
- Ana Melo1
- Andreas Lundquist1
- Anna Fotaki1
- Anna Strachotova1
- Anna Špačková1
- Anne Cambon-Thomsen1
- Antonia Taiani1
- Barbara Magagna1
- Benjamin Neely1
- BjornFJohansson1
- Bruna Piereck1
- Burke, Melissa1
- Carissa Robyn Bleker1
- Cecilia Torres1
- Christof De Bo1
- Christopher Erdmann1
- Cymon Cox1
- Cyril Pommier1
- Daniel Arend1
- Daniel Thomas Lopez1
- Danielle Welter1
- David Stansby1
- Dominik Martinat1
- Dorothy Reilly1
- ELIXIR-CONVERGE WP2 members1
- Edoardo Salladini1
- Emmanuelle Rial-Sebbag1
- Erik Stattin1
- Erik van Nimwegen1
- Erwan Le Floch1
- Fabio Liberante1
- Fatemeh Alidoost1
- Fedela Duccio Bonifazi1
- Fedele Duccio Bonifazi1
- Filipa Pereira1
- Frédéric Schütz1
- Frédérique Lisacek1
- Gauthier Chassang1
- Geert van Geest1
- Grégoire Rossier1
- Guy Naamati1
- Hampus Pehrsson Ternström1
- Herman van Vlijmen1
- Hervé Ménager1
- Hogg, Carolyn1
- Hugo Rodrigues1
- INRAE1
- Ibrahim Emam1
- Irena Maus1
- Ivan Mičetić1
- Ivan Topolsky1
- Jacqueline Ullmann1
- Janina Müller1
- Jaya, Frederick1
- Jill Jaworski1
- Joeri van der Velde1
- Jonas Åkerman1
- Julia Ponomarenko1
- Juliane Röder1
- Karin Westin Tikkanen1
- Kateřina Storchmannová1
- Kenneth Hoste1
- Keywan Hassani-Pak1
- Klaas Vandepoele1
- Korbinian Bösl1
- Kristen Schroeder1
- Kristina Gruden1
- Laura Chabot1
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- Resource type
- lessons59
- Training materials48
- Presentation38
- e-learning36
- Video28
- Tutorial21
- service20
- Lecture16
- Course materials14
- video13
- hands-on tutorial12
- E-Learning9
- E-learning9
- Online material6
- Slides6
- slides6
- course materials5
- Bioinformatics4
- Coding4
- Documentation4
- Lesson4
- Webinar4
- online course4
- podcast4
- Book3
- Data Science3
- Mock data3
- Poster3
- examples3
- scripts3
- tutorial3
- tutorials3
- Series of videos2
- Computational Biology2
- Computer Science2
- Education2
- FREE online course2
- How-to guide2
- Learning pathway2
- Open educational resource2
- Programming2
- Recorded webinar2
- Scripts2
- case studies2
- e-Learning2
- handbook2
- youtube video2
- Blog post1
- Computer Software1
- E-learning + workshop1
- Educational Resource1
- Exercise1
- Jupyter notebook1
- Jupyter notebooks1
- Machine Learning1
- PDF1
- R Shiny application1
- Recording1
- Series of videos1
- Slideshow1
- Training materials with mock data1
- Transcriptomics1
- Workshop1
- additional reading1
- didactic activities1
- documenation1
- educational materials1
- implementation guidelines1
- knowledgebase1
- online modules1
- online tutorial1
- presentation1
- slideck/ presentation1
- workflow1
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- Related resource
- The Carpentries7
- DisProt2
- OpenCloning2
- pydna2
- DMPortal1
- Data Visualisation (theory) 1
- ENA1
- Event1
- FAIR for busy biologists1
- FAIR in (biological) practice1
- FAIRplus FAIRification wizard1
- GitHub1
- HoloFood Project1
- MGnify1
- MetaboLights1
- MobiDB1
- OpenRefine1
- R basics1
- RDMkit1
- REPET image Docker1
- RNA-seq data package1
- Slides for Introduction to statistics with R 1
- Video Walkthrough of the Poster1
- compareMS21
- elabFTW1
- seq-seq-pan1
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- Node
- Switzerland32
- Estonia22
- Netherlands18
- Cyprus16
- Belgium15
- Czech Republic14
- United Kingdom13
- Sweden12
- Germany9
- Norway8
- EMBL-EBI7
- Portugal7
- Spain7
- France5
- Italy5
- Slovenia3
- Finland2
- Denmark1
- Greece1
- Luxembourg1
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- Collection
- HemaFAIR Training: Applying FAIR Principles in Hematology Research16
- ELIXIR Biodiversity Community11
- Byte-sized RSE series5
- Elements of Data Management5
- SARS-CoV-2 : Studying a new virus5
- ELIXIR SIS-Containers - collection of training materials3
- ELIXIR Systems Biology Community: training events and materials2
- ELIXIR Federated Human Data Community1
- PHENotyping and EnviroTyping (PHENET training collection)1
- PINK project1
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- Status
- Active
- Under development4
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